Basic Information
VIS ID
TVIS44024878
Fusion event
HTLV-1-ELMOD3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
85617897/85390774 (Hg38)
End
85617897/85390774 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
ELMOD3
Nearest miRNA
hsa-mir-1285-2/Upstream/5524191; hsa-mir-10b/Downstream/392826;
Nearest TSS
ENST00000437798/Upstream/1226; ENST00000474753/Downstream/7578;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/35934, chr2-CpG: 29/Downstream/23072
Upstream sequence
CTAGAGCTGCTAGGCTTGAGGCCTTGACTGTTGTGTCACCCAGAGCCCCCTCAAGCCTTCTGCTCCCCAATTCTCTCTGTTGCAGAGTTGGAAGTATTGG
Downstream sequence
CCAAGAAGAGCCCACGGCGGCTGCTCAAGACCCTGGAGCTGTACTTGGCCAGGGTGTCAAAGGGACAGGCCTCCTTGTTGGGAGCACAGAAGTGCTATGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate