Basic Information
VIS ID
TVIS44024885
Fusion event
HTLV-1-IGK integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
89867389/89828579 (Hg38)
End
89867389/89828579 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
IGK
Nearest miRNA
hsa-mir-1285-2/Upstream/1016125; hsa-mir-10b/Downstream/6969699;
Nearest TSS
ENST00000437798/Upstream/498150; ENST00000429992/Downstream/23212;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/60478, chr2-CpG: 65/Downstream/409469
Nearby gene
MIR4436A(+755421) ;
Upstream sequence
attccattccattcctttccattccattccattccactgcattccattccattccattccactcgggttgattccatcccattccattcagttgcattgc
Downstream sequence
attccattccattccattccagttgattccattccattccattccattccattccattccattccattccattccactaggtttgattccattccattcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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