Basic Information
VIS ID
TVIS44024891
Fusion event
HTLV-1-ANKRD20A8P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
95435086/94769341 (Hg38)
End
95435086/94769341 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
ANKRD20A8P
Nearest miRNA
hsa-mir-1285-2/Upstream/5956887; hsa-mir-10b/Downstream/2028937;
Nearest TSS
ENST00000437798/Upstream/180819; ENST00000468063/Downstream/48460;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/33450, chr2-CpG: 117/Downstream/87512
Upstream sequence
cattatggtgacctccagtgtgggggctccaaccccatattttccttccgcactgccctagtagaagtttcatataaggctgtgcctttttgggatgctt
Downstream sequence
ttgcctggacacccaggcatttgcatacatcttccaaaatctatagagaggatcccaagcctctagtctcatgctccatccaccagtgacttaacactgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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