Basic Information
VIS ID
TVIS44024914
Fusion event
HTLV-1-ATP2B2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
10590038/10548354 (Hg38)
End
10590038/10548354 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP2B2
Nearest miRNA
hsa-mir-12127/Upstream/153792; hsa-let-7g/Downstream/4947885;
Nearest TSS
ENST00000440867/Upstream/14221; ENST00000440266/Downstream/159653;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/42649, chr3-CpG: 74/Downstream/159213
Nearby gene
ATP2B2(-42770) ;
Upstream sequence
acttaatcgtcatagcaacactaagagctggtgcagagatgctgttattTCCTTGTCCACAATCCCACAGATCTAACCACCATGGGGCAAGCTGGTTTGA
Downstream sequence
TACCACACACAGCATCTGCCTGAGCATGTTCTTTGGTGAGCACATGCAACTCACCAACCCCagcagctctcagccaatgattgacgggtgttgggagttg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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