Basic Information
VIS ID
TVIS44024921
Fusion event
HTLV-1-LOC105374039 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
111235393/111516546 (Hg38)
End
111235393/111516546 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374039
Nearest miRNA
hsa-let-7g/Upstream/1913649; hsa-mir-12124/Downstream/596255;
Nearest TSS
ENST00000440867/Upstream/19451; ENST00000488054/Downstream/25463;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/443992, chr3-CpG: 21/Downstream/157934
Nearby gene
CD96(+25533) ;
Upstream sequence
TCGTGGATGGGCGATTAAGTTTGACTCTGCAGGAAGGAGTAGCTTATGGTAGAGCAGAATGAGGTGATGATGCTTAACTGCCCTCTTTTATATTGTATCT
Downstream sequence
GTGCCATGAGGTGATGCTCTTGGCTTAGAAGCCCTCACACTGCCATTTATACCAGTCCCTTAGATCTCGGTCAACCCCTCCCGCCCTGAATTAGTGCAAt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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