VISDB Viral Integration Site DataBase

VIS ID

TVIS44024925

Fusion event

HTLV-1-USF3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q13.2

Reference genome

Start

End

113395391/113676544 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6083 ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4252 ; hsa-mir-4691-3p ; hsa-mir-6867-5p ; hsa-mir-4693-3p ; hsa-mir-574-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-3651 ; hsa-mir-596 ; hsa-mir-4293 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-4712-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-3177-5p ; hsa-mir-1-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6868-3p ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-500a-5p ; hsa-mir-3162-3p ; hsa-mir-3074-3p ; hsa-mir-652-5p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-6516-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-4668-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-766-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-3613-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p

Nearest miRNA

hsa-let-7g/Upstream/81602; hsa-mir-12124/Downstream/639931;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/143101, chr3-CpG: 81/Downstream/19516

Upstream sequence

tggtgagcaaagtgaggaaagccccttataaaaccatcatctcatgagaactcactcactatcacaagaacagcatgagggtaacggcccccatgattca

Downstream sequence

attacctcccacttgggcccctcccatgacacatgggattatgggaaccataattcaagatgagatttggatggggacacagcctaactatatcaACAAC