Basic Information
VIS ID
TVIS44024926
Fusion event
HTLV-1-CCDC191 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
113686455/113967608 (Hg38)
End
113686455/113967608 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCDC191
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7g/Upstream/372666; hsa-mir-12124/Downstream/348867;
Nearest TSS
ENST00000440867/Upstream/9154; ENST00000488665/Downstream/34163;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19065, chr3-CpG: 35/Downstream/88692
Upstream sequence
ttttattgatacataatatacatattttgggggtacatgtaattttatacattcatgtaatgtgtaaagatcaaatcagggtatttgggatatccatcac
Downstream sequence
cttaaatatttatcttttatttaccatggggacattcaagttattctcttctggttattttgaaatgcacaataggttattattaactatagtcatccta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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