Basic Information
VIS ID
TVIS44024937
Fusion event
HTLV-1-B4GALT4-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
118951239/119232392 (Hg38)
End
118951239/119232392 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
B4GALT4-AS1
Nearest miRNA
hsa-let-7g/Upstream/2382025; hsa-mir-12124/Downstream/852172;
Nearest TSS
ENST00000440867/Upstream/2339; ENST00000482743/Downstream/4679;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/197278, chr3-CpG: 75/Downstream/8100
Upstream sequence
atgcactggggtaaaatcacttatattaacctatgtaattctcatttaaccatatgatgtaagaattactagtctcatcttacaggtaagaaaaggaaag
Downstream sequence
gaaggtttggagagatttaagtaccttgccaaagcccacacgactagtaagtggtagcgtggggtctccgcccaggtgctcagctccacatccTTCACAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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