VISDB Viral Integration Site DataBase

VIS ID

TVIS44024944

Fusion event

HTLV-1-HACD2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.1

Reference genome

Start

End

123282319/123563472 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-766-5p ; hsa-mir-3148 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-1205 ; hsa-mir-6894-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-3605-5p ; hsa-mir-4649-3p ; hsa-mir-4459 ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-2392 ; hsa-mir-665 ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1247-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6501-3p ; hsa-mir-4762-5p ; hsa-mir-205-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-335-5p ; hsa-mir-340-3p ; hsa-mir-4668-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-661 ; hsa-mir-6827-3p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-let-7g/Upstream/401593; hsa-mir-12124/Downstream/569457;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/113191, chr3-CpG: 87/Downstream/21020

Upstream sequence

GCATGGAGTGGGAGGCAGGGAGTAGGCACTGGAAAGACTGGAGAAGTGGGCAGGGCACAGATCATGAAGAAATTTAAACCAGCAAAAGGTTTTAAGTAGG

Downstream sequence

CAAATGACATGCTCAGAATGGTCCTATAACTAAACCcacaggagcagtgtggagcatggacttggagccacacagccataggttcaagtcctgggctagg