Basic Information
VIS ID
TVIS44024950
Fusion event
HTLV-1-ALG1L integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
125673525/125954682 (Hg38)
End
125673525/125954682 (Hg38)
Orient
-
Location type
Intronic
Target gene
ALG1L
Nearest miRNA
hsa-let-7g/Upstream/164130; hsa-mir-12124/Downstream/1620584;
Nearest TSS
ENST00000440867/Upstream/17643; ENST00000511035/Downstream/14462;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/37576, chr3-CpG: 92/Downstream/3339
Nearby gene
ROPN1B(+14462) ;
Upstream sequence
aaaaaatgaattagacccaagtttatctgacttcaaagctcACTTTAAAAACCAAAAGAGGACGTGGGATCTTTGAACACGGCATCTGATGTAGCACATG
Downstream sequence
CTGATGACTTCTGGTGCAGACTGTGTTCCCCTTGACTATTTCTTTCCtgcttagcacatagtagatgttcaaacaaatagttgttgaattaaATTATTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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