Basic Information
VIS ID
TVIS44024953
Fusion event
HTLV-1-TXNRD3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
126352859/126634016 (Hg38)
End
126352859/126634016 (Hg38)
Orient
-
Location type
Exonic
Target gene
TXNRD3
Nearest miRNA
hsa-let-7g/Upstream/843464; hsa-mir-12124/Downstream/941250;
Nearest TSS
ENST00000440867/Upstream/24771; ENST00000514908/Downstream/20974;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/91503, chr3-CpG: 88/Downstream/20669
Upstream sequence
TATGATGTTCAACAAATTCTCCATAGGAATTGACATAGGCCACAGCCTTTTCCCTCAGAGACAACCTGTAGCCCCAGTTTAGAGAGCTGATGTGGTTCTG
Downstream sequence
AATCGCTTTTGTCATTGTCTCCCAGTTGTGCCTCACTAAGAAGAAATAATCAGGGTGAAGATGTTAGGTGAATTTTACCTTTAATGGTAAATTACATATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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