Basic Information
VIS ID
TVIS44024964
Fusion event
HTLV-1-NPHP3-ACAD11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
132386455/132667611 (Hg38)
End
132386455/132667611 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
NPHP3-ACAD11
Nearest miRNA
hsa-let-7g/Upstream/681680; hsa-mir-1224/Downstream/1700193;
Nearest TSS
ENST00000440867/Upstream/353; ENST00000469158/Downstream/3071;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/6812, chr3-CpG: 57/Downstream/54258
Upstream sequence
AGTTTCAGGAAGTCTTTCTTTAATTTGTAAAACAGATAAATACGAAGTGAATTAATGAGGTTAAATAGGAAAGTAGAAGATGTTAGGAAACCCAGAGTCC
Downstream sequence
ATTTCTTATCCCTGAAAGCCTTTGGATCTCTTTAAAGTATCTGGGGTGCCTTGGATCACCAGATCTATATTCGCTGctttattttagagatgaagataca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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