Basic Information
VIS ID
TVIS44024979
Fusion event
HTLV-1-LINC02618 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
141401754/141682912 (Hg38)
End
141401754/141682912 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02618
Nearest miRNA
hsa-let-7g/Upstream/7245006; hsa-mir-1224/Downstream/9882964;
Nearest TSS
ENST00000440867/Upstream/96213; ENST00000498828/Downstream/55292;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/22483, chr3-CpG: 68/Downstream/55127
Nearby gene
RNF7(+55297) ;
Upstream sequence
CCCATGCAATTGGGTGGGGCCTTAGACTCAAAAGGCCAGTGGGCTGTGAGGAGAGAGAGGAGATTCGAGCCTGAGAAGTGGTAGCCCAGAGACACAGAAC
Downstream sequence
TGGGATCCGGCCAGGGCCCTGGTGGTAAAAGCTGGGGAGAGGGCGTTCTCTGTGGAGGTTCTCAGGGTTTCTGAAATGCTGGGAGGAACGTCAGGCAGGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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