VISDB Viral Integration Site DataBase

VIS ID

TVIS44024985

Fusion event

HTLV-1-PLSCR1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q24

Reference genome

Start

End

146246635/146528848 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-18a-3p ; hsa-mir-10a-5p ; hsa-mir-99a-5p ; hsa-mir-628-5p ; hsa-mir-5704 ; hsa-mir-1295b-3p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-33a-3p ; hsa-mir-3121-3p ; hsa-mir-7855-5p ; hsa-mir-7641 ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4326 ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-5701 ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-431-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-6731-3p ; hsa-mir-1288-5p ; hsa-mir-4762-5p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-3653-5p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-1224-5p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-3150b-3p ; hsa-mir-3915 ; hsa-mir-4689 ; hsa-mir-4784 ; hsa-mir-6858-5p ; hsa-mir-6888-5p ; hsa-mir-8055

Nearest miRNA

hsa-let-7g/Upstream/12090942; hsa-mir-1224/Downstream/5037028;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/58925, chr3-CpG: 36/Downstream/15491

Upstream sequence

AGCTGGGCCAGGACCTGAATGGCCGGCTGGTGGGGGTGGGTAGCTGACCTGGGGCCCAGGGTAGCCACTATATCCTGGAGGTCCTGAAATACAAACAAGT

Downstream sequence

GAAATGATTTGTAACTGCACCAAAAATGGAATTGTCAACCTTTTTAGGGTTATGCCATCTATCTATAAGTTGACATTTCAGCGTAGACATCTGTATCTGT