Basic Information
VIS ID
TVIS44025013
Fusion event
HTLV-1-NAALADL2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
174507365/174789575 (Hg38)
End
174507365/174789575 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/3682816; hsa-mir-1224/Downstream/579965;
Nearest TSS
ENST00000440867/Upstream/348588; ENST00000485853/Downstream/69705;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/348017, chr3-CpG: 133/Downstream/2406874
Nearby gene
NAALADL2(+69746) ;
Upstream sequence
GAACTACATCTGTGGCTCTCATCAAGAACCCTGTTGTGAAATAACTTCTAGAAATGGTGCTGAGGATTAATGGTGCCTTCTAGAAATGATGCTGAGGATC
Downstream sequence
AATTGATTTTAAAACAAAAACACAAGAAAACAAAACTAGAACATGTTTTTAAAACAGCACCCAAGGAGGTAAACAGAACCTAAAATGCAAATGGTAAATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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