VISDB Viral Integration Site DataBase

VIS ID

TVIS44025021

Fusion event

HTLV-1-ZMAT3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q26.32

Reference genome

Start

End

178765541/179047753 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-3613-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-4289 ; hsa-mir-8084 ; hsa-mir-4469 ; hsa-mir-361-5p ; hsa-mir-626 ; hsa-mir-512-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-374b-3p ; hsa-mir-944 ; hsa-mir-578 ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-580-3p ; hsa-mir-526b-5p ; hsa-mir-3928-3p ; hsa-mir-539-5p ; hsa-mir-4766-5p ; hsa-mir-654-3p ; hsa-mir-409-3p ; hsa-mir-4282 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-130a-3p ; hsa-mir-451b ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-1468-3p ; hsa-mir-545-3p ; hsa-mir-4698 ; hsa-mir-646 ; hsa-mir-548p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-503-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548s ; hsa-mir-1178-3p ; hsa-mir-3926 ; hsa-mir-7158-5p ; hsa-mir-18b-3p ; hsa-mir-3190-5p ; hsa-mir-5009-3p ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-302f ; hsa-mir-374a-3p ; hsa-mir-1245b-3p ; hsa-mir-2115-3p ; hsa-mir-369-3p ; hsa-mir-5692a ; hsa-mir-3591-5p ; hsa-mir-7705 ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-591 ; hsa-mir-6513-3p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-33a-3p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-488-3p ; hsa-mir-6749-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-219a-2-3p ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-5089-5p ; hsa-mir-4665-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-4485-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-190a-3p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-5011-5p ; hsa-mir-1277-5p

Nearest miRNA

hsa-let-7g/Upstream/2532602; hsa-mir-1224/Downstream/4839047;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/1849687, chr3-CpG: 63/Downstream/23764

Upstream sequence

accagcctgaccaacatggtgaaacccaatctctactaaaaatacaaaaaaaaaaaatagccggatgtggtggtgctcgcctatagtctcagctactcag

Downstream sequence

gaggctgaagcaggagaatcacttcagtccgggaggcaaaggttgcagtgagctgagatcatgtgactgcactccagcctgggtgacagagtaagactca