Basic Information
VIS ID
TVIS44025029
Fusion event
HTLV-1-LINC02054 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
184130954/184413166 (Hg38)
End
184130954/184413166 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
LINC02054
Nearest miRNA
hsa-let-7g/Upstream/171677; hsa-mir-1248/Downstream/840044;
Nearest TSS
ENST00000440867/Upstream/11536; ENST00000645656/Downstream/6703;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/26435, chr3-CpG: 23/Downstream/78140
Nearby gene
CHRD(+23331) ;
Upstream sequence
ttagtagagatggggtttcaccatcttggccaggctggtctcgaactcctgacctcaggtgatccccctgctttggtctcccaaagtgctgggattacag
Downstream sequence
tgtgagccaccacgcccagtcagttctagtttaaagagtcaagtaactcaagatgactttttaccaaaaacagtagcctcttcccatccttcctcttcaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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