Basic Information
VIS ID
TVIS44025049
Fusion event
HTLV-1-LINC01968 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
194458111/194737382 (Hg38)
End
194458111/194737382 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01968
Nearest miRNA
hsa-let-7g/Upstream/4907373; hsa-mir-3137/Downstream/397124;
Nearest TSS
ENST00000440867/Upstream/28342; ENST00000455796/Downstream/31330;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49066, chr3-CpG: 29/Downstream/327866
Upstream sequence
TCCAGGGTTACAACATCTACTTCTCTTCCTCTTCCTTTCTCAGTTTCTCGCTCTTCCTCTGCATCTGTGTGTGTCTGTGTGTGCAGCTTCTGCTTTCTGA
Downstream sequence
GCATCTACTTCTGCTTTGCATGTTTCTGCCActtctccttctgcctttcctgctgcttctgctgcttccatgcccacttcttcttttctgcctctgcctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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