Basic Information
VIS ID
TVIS44025068
Fusion event
HTLV-1-SCN10A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
38825999/38784508 (Hg38)
End
38825999/38784508 (Hg38)
Orient
+
Location type
Intronic
Target gene
SCN10A
Nearest miRNA
hsa-mir-12127/Upstream/815028; hsa-let-7g/Downstream/353698;
Nearest TSS
ENST00000440867/Upstream/134835; ENST00000432250/Downstream/9502;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/134486, chr3-CpG: 57/Downstream/267470
Upstream sequence
aggtcttcgacaaaattcaacacccattcatgctaaaagctctcaataaactaggtattgatggaatgtatctcaaaataataagaactatttatgacaa
Downstream sequence
gcccccagccaatatcatactgaatgggcaaaaactggaagcatttcctttgaaaaccagcacaagacaagaatgccctatctcaccactcttattcaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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