Basic Information
VIS ID
TVIS44025070
Fusion event
HTLV-1-LOC102724104 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
39302946/39261455 (Hg38)
End
39302946/39261455 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724104
Nearest miRNA
hsa-mir-12127/Upstream/123189; hsa-let-7g/Downstream/4852757;
Nearest TSS
ENST00000440867/Upstream/68859; ENST00000326306/Downstream/18579;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/80276, chr3-CpG: 125/Downstream/121750
Nearby gene
CX3CR1(-2039) ;
Upstream sequence
GTACGGTGCAGGTGGAGAAAAAATTAGCTGCTGAGTTAGGACAAACTGCTCCAATTTTGAAGGCACAAATGGGCATCATCTTGGGCCCGGGTACTACCCA
Downstream sequence
AGGTGGACCTCTCAATCAGGCTCTTATGCTCCCAGGTGTAGTTGTTGGGTGAACTCTCTCCCTGGATGCTCAGGGACAGCATCTCAGAGAGAGGTGAATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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