Basic Information
VIS ID
TVIS44025074
Fusion event
HTLV-1-EIF4BP4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
42382414/42340922 (Hg38)
End
42382414/42340922 (Hg38)
Orient
+
Location type
Intronic
Target gene
EIF4BP4
Nearest miRNA
hsa-mir-12127/Upstream/3202656; hsa-let-7g/Downstream/1773290;
Nearest TSS
ENST00000440867/Upstream/74715; ENST00000490161/Downstream/66586;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/74894, chr3-CpG: 127/Downstream/160406
Nearby gene
LYZL4(-56156) ;
Upstream sequence
CATCCTACAATGCTCTTCTAGGGAACTTGCTCTATGATGTGATAGAAGACTCAATTAAGGAATTATTTAGAGGATTAAATATTGATACAGCACACTGACC
Downstream sequence
ACATGAACCCGGCATCCAGAGAGGTTGAAAGTTTTAGTTATCCTGAGTTTGAGGACCTGGATGCCCTGTTCAGTACCCTGGGTCTCAATGAAGAGTCTGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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