Basic Information
VIS ID
TVIS44025079
Fusion event
HTLV-1-XCR1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
46061617/46020125 (Hg38)
End
46061617/46020125 (Hg38)
Orient
+
Location type
Intronic
Target gene
XCR1
Nearest miRNA
hsa-mir-12127/Upstream/1158144; hsa-let-7g/Downstream/1829430;
Nearest TSS
ENST00000440867/Upstream/24301; ENST00000484025/Downstream/7362;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/24144, chr3-CpG: 26/Downstream/444546
Nearby gene
XCR1(-674) ;
Upstream sequence
GGAGCTACCACCATCAACCAAATAGGAGGAGGACACTTTAGGTACAAAGTGATAAATGTGAAGTCAGCTCACTATCCACCTGGGAAGGATGAGATGTCGG
Downstream sequence
AGGAGTCCACCCTAGATGCCTTCACCAAGGTGGGTGTTCACCAAGGTAGGTGAGCCTTTGGAGctgggctgttggcccctggagggtagcaactgtatct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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