Basic Information
VIS ID
TVIS44025088
Fusion event
HTLV-1-SEMA3F-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
50157653/50120220 (Hg38)
End
50157653/50120220 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEMA3F-AS1
Nearest miRNA
hsa-mir-12127/Upstream/313975; hsa-let-7g/Downstream/107216;
Nearest TSS
ENST00000440867/Upstream/3675; ENST00000426511/Downstream/34825;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/30449, chr3-CpG: 132/Downstream/34318
Nearby gene
RBM5(+1256) ;
Upstream sequence
AGAACATCATTTTGACCCAGAAGACCATGCCTGACCAGGTCAGGAAGTATACCTGGATCTCAGGCTGTTCTTGGGACCAGATGATGTGATGGGTTGCTCA
Downstream sequence
CATTGCCAATCTGGCCAAACTGAGTGCTTAAGCTCCACAGATTGGGCATGCAGTTAAGGTGGCCTTTTCTCTGCAGTTTACTTTTGAAGCTAGACTTGCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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