Basic Information
VIS ID
TVIS44025099
Fusion event
HTLV-1-ACOX2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
58495859/58510132 (Hg38)
End
58495859/58510132 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACOX2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7g/Upstream/2657538; hsa-mir-12124/Downstream/2107673;
Nearest TSS
ENST00000440867/Upstream/11704; ENST00000472513/Downstream/7255;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17585, chr3-CpG: 47/Downstream/76630
Upstream sequence
atttatatttatcaccccctctcttcactcctacctccccttgttcccattcttcttcctcctggccttcgggcctcccaatatagttataattttggcc
Downstream sequence
agaccaatatttagtattgacattatgatgattgtgtGTCATTAAAGCATTGGTGGTAACTGGGATACTGTATCCAATGTAATCGTTTCTTGATgatccc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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