Basic Information
VIS ID
TVIS44025131
Fusion event
HTLV-1-GBE1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
81671646/81622495 (Hg38)
End
81671646/81622495 (Hg38)
Orient
+
Location type
Intronic
Target gene
GBE1
Nearest miRNA
hsa-let-7g/Upstream/2114526; hsa-mir-12124/Downstream/3763215;
Nearest TSS
ENST00000440867/Upstream/44552; ENST00000471614/Downstream/27383;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1855745, chr3-CpG: 75/Downstream/138669
Upstream sequence
ttccagcttctgtttttcttcctgacctctttatgttagagtaacttggagctcagtagctcaaccacatctttcttcacacacactcttcagatgatct
Downstream sequence
gatacaagctcactgctttgaatgccctttacaaacagatgatttctgactcaaattgccagtccgaacctccccactaaattccaggcttacattttta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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