Basic Information
VIS ID
TVIS44025136
Fusion event
HTLV-1-LOC105377193 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
84965916/84916765 (Hg38)
End
84965916/84916765 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377193
Nearest miRNA
hsa-let-7g/Upstream/5408796; hsa-mir-12124/Downstream/468945;
Nearest TSS
ENST00000440867/Upstream/31829; ENST00000473523/Downstream/42216;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2108672, chr3-CpG: 48/Downstream/42368
Nearby gene
CADM2(+42217) ;
Upstream sequence
ctcaggcccagtccctcttgtttgtagacttagagcagttctgtccacctggagacccagaagggggcatgtcccacagtgctctgcaggctgacacact
Downstream sequence
gacctcagtcccactgtgaatcctaaagtggccctggaaattggctctatcaatcacttctcaactgcAGTATGAAAGCAGGCCTGCTCACTCGGAAAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate