Basic Information
VIS ID
TVIS44025176
Fusion event
HTLV-1-LOC107986306 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
117796041/116874885 (Hg38)
End
117796041/116874885 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986306
Nearest miRNA
hsa-mir-12113/Upstream/2218031; hsa-mir-1305/Downstream/8632374;
Nearest TSS
ENST00000502981/Upstream/359739; ENST00000420701/Downstream/210691;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/168931, chr4-CpG: 48/Downstream/51046
Nearby gene
TRAM1L1(-208669) ;
Upstream sequence
GGAATCTAGACTTAAATTGCTACATGAAGGTATAATTTAGTGCACTTGATGAGTAACAAGCTCTATTAGGGAACTGAAAGCCTTAGCAAAACTGGCTAAG
Downstream sequence
ATCTTAAAATACATTAATAGGGTTACTTTTGAATTGGATTTTTACAAATCAAACGGAGTAATACATTAATGGCTGGATAATCAGGAGGACACATAATAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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