Basic Information
VIS ID
TVIS44025180
Fusion event
HTLV-1-ADAD1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37/hg19
Start
123311667/122390512 (Hg38)
End
123311667/122390512 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADAD1
Nearest miRNA
hsa-mir-12113/Upstream/7733658; hsa-mir-1305/Downstream/3116747;
Nearest TSS
ENST00000502981/Upstream/10193; ENST00000417927/Downstream/65928;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/10862, chr4-CpG: 29/Downstream/341918
Upstream sequence
aggttgtggaagttctcctggataacatcctgaagtgtgttttccagcttgtttccattctctctgtctccttctggtactccagtcaatcataggtttg
Downstream sequence
gtctttttatgaagtcccatattagagtctttgttcattcattttcatgtttttgtctattcttgtttgcatgtcttatttcagtaaggtggtcttcaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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