Basic Information
VIS ID
TVIS44025188
Fusion event
HTLV-1-LINC02615 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
129373771/128452616 (Hg38)
End
129373771/128452616 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC02615
Nearest miRNA
hsa-mir-12113/Upstream/2945309; hsa-mir-1305/Downstream/14890844;
Nearest TSS
ENST00000502981/Upstream/24546; ENST00000504984/Downstream/2553;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/163991, chr4-CpG: 34/Downstream/356875
Upstream sequence
CCTGGTTGCTGGTGGTTCAAAAAGGGTTCATTTCTGTCTGCTGAGAGGGCTCTGCGATCTGTGAGTTCGTGGTGGCCAAACATAGGGAGACTTCCAAGTG
Downstream sequence
AAACCCTCGTTGATGACATAGTGAAACTGTGAGTTTATTGAAGTGGGAATACACCCCCTCCTAACTTACCCCACACAGAAACAGATCTGTGCAAACATGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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