Basic Information
VIS ID
TVIS44025199
Fusion event
HTLV-1-LINC00616 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
138975179/138054025 (Hg38)
End
138975179/138054025 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00616
Nearest miRNA
hsa-mir-12113/Upstream/12546718; hsa-mir-1305/Downstream/5289435;
Nearest TSS
ENST00000502981/Upstream/4453; ENST00000502757/Downstream/37014;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1241437, chr4-CpG: 21/Downstream/506555
Upstream sequence
ATCAACAGCACAAATAGAAACATGCAGGCAGGAAGGCAGCACTGAGTTGCAAATGTGATAACTAGGAATTTAGAATGTTTTTGAAGTGAAGTCATGTTTC
Downstream sequence
ATCCTTACACAGCTTATGGAAAAAAAATGTGGAAACAAGAAAAGAAACTACAGAGCAGAGACAATGCATATGAAAGAGGAGAAGCACCCCAGAAGAGGAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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