Basic Information
VIS ID
TVIS44025208
Fusion event
HTLV-1-LOC105377462 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
145275370/144354218 (Hg38)
End
145275370/144354218 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377462
Nearest miRNA
hsa-mir-12113/Upstream/1010683; hsa-mir-1305/Downstream/2054365;
Nearest TSS
ENST00000502981/Upstream/213432; ENST00000568324/Downstream/151682;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/653153, chr4-CpG: 91/Downstream/290872
Nearby gene
GYPA(-213431) ;
Upstream sequence
GAAAAACAATACAATAGTCAGTGCAAACTGAACCTTTGTCAGAAAATGTGTGTCTTTTATGTTACAGCTGTGAACTGCTCATGTGAAATGTGTGCTGAGT
Downstream sequence
GtcattcattccaaaaatatttattaaatactaacatgcctggttttgtgttaagtcctggaggtatggcacctggcaaaatggCCTCACCAGAACTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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