Basic Information
VIS ID
TVIS44025214
Fusion event
HTLV-1-ARHGAP10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
148884049/147962898 (Hg38)
End
148884049/147962898 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARHGAP10
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-214-3p
Nearest miRNA
hsa-mir-12113/Upstream/180230; hsa-mir-1305/Downstream/4526429;
Nearest TSS
ENST00000502981/Upstream/16659; ENST00000513548/Downstream/60156;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/230131, chr4-CpG: 294/Downstream/479162
Upstream sequence
gattacaggtgcacaccaccacactggctaatttttgtatttttagtagagatggtctcactatgttggccatgctggtcttgaactcctgacctcaagg
Downstream sequence
gatctgcctgcctcggcctcccaaagtgctgggattataggcatgagccactgtgcctggccACCACTCCTTTCATTTCTTTTTTCTTATCTCCCACATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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