Basic Information
VIS ID
TVIS44025225
Fusion event
HTLV-1-DCHS2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
155278614/154357462 (Hg38)
End
155278614/154357462 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCHS2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12113/Upstream/1820946; hsa-mir-1305/Downstream/4771340;
Nearest TSS
ENST00000502981/Upstream/1732; ENST00000498375/Downstream/33834;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/24011, chr4-CpG: 24/Downstream/59282
Upstream sequence
aaaagcaaaaagaaaaagcaggtaagctataagtctgcctttcttcatagtccaggacacgtagcactcttgtgcaaataattcacaatctttctgagcc
Downstream sequence
cagctatcaccagacccttggatgagagtaaaatgcaggttagttcactgcaaccttggtgttatcagtactgcacaaagccttctttagcacatcacac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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