Basic Information
VIS ID
TVIS44025261
Fusion event
HTLV-1-HAND2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
174510639/173589488 (Hg38)
End
174510639/173589488 (Hg38)
Orient
-
Location type
Intronic
Target gene
HAND2-AS1
Nearest miRNA
hsa-mir-12113/Upstream/321255; hsa-mir-1305/Downstream/834307;
Nearest TSS
ENST00000502981/Upstream/30334; ENST00000509968/Downstream/307764;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/50585, chr4-CpG: 21/Downstream/624620
Nearby gene
HAND2-AS1(No orient, 47658)
Upstream sequence
TTGAAAAAGGAAAACCTCATACGTACATTTAAAAATATGTGCTGAAACAGTGCTGAAATAACCAGGCTTTTGTGAGTGAAAATTTTTTTAATCCATTCAT
Downstream sequence
ATATGTCCACATGTTGATGGTATAACAGCTGCCTTCAGAATATTATTTTTAGGGATCACTGGCTGCACCCATAACACAGAAATGCCTCCTTTTCCTGCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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