Basic Information
VIS ID
TVIS44025269
Fusion event
HTLV-1-LOC105377581 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
184648776/183727623 (Hg38)
End
184648776/183727623 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377581
Nearest miRNA
hsa-mir-12113/Upstream/1558245; hsa-mir-3945/Downstream/1123390;
Nearest TSS
ENST00000502981/Upstream/25963; ENST00000511250/Downstream/38098;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/4362, chr4-CpG: 20/Downstream/30755
Upstream sequence
AATGGCCAGGGGATGACTTAGTTGCTCGAAAGTGCAATCTGGGCTGTCTTGTTACTAAAAACAGTTCTGTGAAATGCTACAGTCAACAGCCACTTGCTGG
Downstream sequence
TTTAACTCAGTGATTGAACTGGATACAGTGACTAGAGAGAATCCAAATAGTATGGAGGCCCAAGGTCAGCTGCCTTGTTGAGTCAGTCAGCAGAGAGAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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