Basic Information
VIS ID
TVIS44025272
Fusion event
HTLV-1-LOC105377582 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
185214439/184293286 (Hg38)
End
185214439/184293286 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377582
Nearest miRNA
hsa-mir-12113/Upstream/2123908; hsa-mir-3945/Downstream/557727;
Nearest TSS
ENST00000502981/Upstream/72056; ENST00000509538/Downstream/54626;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/124450, chr4-CpG: 20/Downstream/163156
Nearby gene
LINC02363(-47745) ;
Upstream sequence
TAGAACAAGAAAGCCAGTGGGTAGTAAAATACACATAATGAAAATGATGTGTGCCCTAAACTTCAGGTGAACCAGCGAGagtgttttacagcacacactc
Downstream sequence
caacctagaatcattcacacgggtccaaatcccagcttcactctcatcgctagacatagggctcaatgttccaaattttagctcttctcatctctaaaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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