Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene1963976719172335194569941935759119358966193811781938132719406051
Basic Information
VIS ID
TVIS44025280
Fusion event
HTLV-1-LINC02438 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
19407674/19406051 (Hg38)
End
19407674/19406051 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LINC02438
Nearest miRNA
hsa-mir-12113/Upstream/5778094; hsa-mir-12115/Downstream/1122224;
Nearest TSS
ENST00000502981/Upstream/916543; ENST00000511431/Downstream/49385;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1383401, chr4-CpG: 284/Downstream/845602
Nearby gene
SLIT2(+845854) ;
Upstream sequence
AGATGGTAAACAAGAAAGGACTTTGTGCCCCGTTGTGTTCTGATGCTTTTTTCCATGATCACTTTCATGAATTTACAGATGGGGAATTAAAAACATGGAA
Downstream sequence
AATATTTGTATGGTATTTTTGGATGGTTATTAGAAATCAGAATATAACCTCTTAATTGACATTCCAGTATTTATTCCTTTATTACTAATCTACAATTAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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