Basic Information
VIS ID
TVIS44025282
Fusion event
HTLV-1-KCNIP4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
21138167/21136544 (Hg38)
End
21138167/21136544 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
KCNIP4
Nearest miRNA
hsa-mir-12113/Upstream/608160; hsa-mir-12115/Downstream/328156;
Nearest TSS
ENST00000502981/Upstream/152503; ENST00000515680/Downstream/167445;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/435831, chr4-CpG: 95/Downstream/811918
Upstream sequence
TTTATTAGTTCAGCAAATAGGCATTGGGTTTTCACTGGGTTTGTAAACTAGAAGTTACAGTGTGCTGAATCTTGAGAAAACTGATTGCTAGAGGTAGAAC
Downstream sequence
AACAAGAATGTTCCAGATGTTTCCTGTCCTTTCCTCCATTCCTCCATTAGGTACCTCTCAAAGCCTAAGTTGATGATAATTCTCTTGGGATGCAGGTTTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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