Basic Information
VIS ID
TVIS44025283
Fusion event
HTLV-1-KCNIP4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
21475596/21473973 (Hg38)
End
21475596/21473973 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
KCNIP4
Nearest miRNA
hsa-mir-12113/Upstream/9215; hsa-mir-12115/Downstream/1041339;
Nearest TSS
ENST00000502981/Upstream/169431; ENST00000505528/Downstream/70683;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/773260, chr4-CpG: 95/Downstream/474489
Upstream sequence
tggctaatttttgtatttttagtagggatcaggttccaccatgttggccaggctgtcctcaaactcctgacctcagatgattcacccgcctcagcctccc
Downstream sequence
aaagtgctgacattacaggcgtgagccaccactcccggccCAGGCAACTTAACAGAGCTGAATTCTTAACAGGGCTGAGAATTTTTAACAGGGCTGTGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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