Basic Information
VIS ID
TVIS44025305
Fusion event
HTLV-1-LOC105374396 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
35872498/35870876 (Hg38)
End
35872498/35870876 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374396
Nearest miRNA
hsa-mir-12113/Upstream/7051208; hsa-mir-1243/Downstream/555490;
Nearest TSS
ENST00000502981/Upstream/1202110; ENST00000502245/Downstream/175158;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/5147656, chr4-CpG: 100/Downstream/373133
Nearby gene
ARAP2(-195122) ;
Upstream sequence
GAAAATTATATTTTGGATAGGTAAAATTTTTTTAGCTAAATTTGTTGCAGAGTAACTCCACTGTATATTAGCTTTTGTGAAAGTTTAAATAAAATGAGCA
Downstream sequence
GAGACCAGTTGAAACTCAGACACAATTGAACCTGAGACGTAAGTACTGGAGACTAGAACTGGCAACACAAAGCATCAATCAACCCCAGGACAGCCTAACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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