Basic Information
VIS ID
TVIS44025313
Fusion event
HTLV-1-LOC105374358 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3962582/3960855 (Hg38)
End
3962582/3960855 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374358
Nearest miRNA
hsa-mir-4800/Upstream/1710699; hsa-mir-12113/Downstream/1962420;
Nearest TSS
ENST00000502981/Upstream/194457; ENST00000502918/Downstream/266034;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/4307, chr4-CpG: 89/Downstream/146152
Nearby gene
FAM86EP(-5427) ;
Upstream sequence
ATTGCCTGTCTGCTCTGCTCTGGTTGAAGAAATAAGTCCGACTGTCTCCGAGGCTATGGAGCAGTCCATCAAGAATAAAAGCCCTCTgccaggcacgttg
Downstream sequence
cctcacacctgtaataccagtactttgggagtcctaggcaggtggatcacttgaagtcaggagtttgacaccagcatggccaacatggtgaaaccctgtt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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