Basic Information
VIS ID
TVIS44025329
Fusion event
HTLV-1-LOC112268466 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
53344231/52478065 (Hg38)
End
53344231/52478065 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112268466
Nearest miRNA
hsa-mir-12113/Upstream/4825322; hsa-mir-1243/Downstream/234617;
Nearest TSS
ENST00000502981/Upstream/399721; ENST00000503051/Downstream/150301;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/400983, chr4-CpG: 141/Downstream/180732
Nearby gene
USP46(-112896) ;
Upstream sequence
TTATAGGGACTAAATCAGTGGCTTCCAGTTTATTTGTTTTTTAACTCGCAtattagtcaggtggattgtccagagaaacagaaccaacagggtataaatg
Downstream sequence
tgtgaggctggggggttgggagcaatagtgagggcgagagagagagaaagatttattagacttgttataagacatcagctcatgtgattatggaggttga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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