Basic Information
VIS ID
TVIS44025332
Fusion event
HTLV-1-SCFD2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
53942160/53075993 (Hg38)
End
53942160/53075993 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
SCFD2
Nearest miRNA
hsa-mir-12113/Upstream/363246; hsa-mir-1243/Downstream/7846626;
Nearest TSS
ENST00000502981/Upstream/130304; ENST00000510668/Downstream/289948;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/213160, chr4-CpG: 43/Downstream/289548
Upstream sequence
gttggaaaaatggtgctgatagacttgctagacacagggttgccagaaatctttaatttgtaaaaacaaaaccatacaaaaaatgcaatatgtgcacagt
Downstream sequence
gcaataaagtgaagctccataaaacaaagtgtacctgTATATGTGTAGGGATTATTTGCCCCAAAAAAGTAGTTTTATAGCAAAAGGTATAATTTCTTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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