Basic Information
VIS ID
TVIS44025339
Fusion event
HTLV-1-LOC105377660 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
56525068/55658901 (Hg38)
End
56525068/55658901 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
LOC105377660
Nearest miRNA
hsa-mir-12113/Upstream/2946154; hsa-mir-1243/Downstream/5263718;
Nearest TSS
ENST00000502981/Upstream/22203; ENST00000504250/Downstream/160918;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/22403, chr4-CpG: 44/Downstream/134559
Nearby gene
NMU(-22603) ;
Upstream sequence
TGATGTTGACTCTGACCCTAAGGAAAACAAATACACTTAGTAAGGGCTATACTCTGCTCTGAGTTAGAAATGACTCACTTAGCTTCTGAAGATACTCTGC
Downstream sequence
CATTTCTGTCAACCTCCCTTTGCTCTGAATGCATGCTCATAGAGCAAACTACTGATTTGTTTTCACACAGGCTTTAAGATATCTTGAAACCAGGAAGAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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