Basic Information
VIS ID
TVIS44025341
Fusion event
HTLV-1-EXOC1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
56722622/55856456 (Hg38)
End
56722622/55856456 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
EXOC1
Nearest miRNA
hsa-mir-12113/Upstream/3143709; hsa-mir-1243/Downstream/5066163;
Nearest TSS
ENST00000502981/Upstream/2717; ENST00000505501/Downstream/1883;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2394, chr4-CpG: 82/Downstream/92178
Upstream sequence
AAACTTGGAGAGGCCAGATTAAGAGAACAGAAAGAAGGGCAATGTCAGAAGACTAGAGGCTGAGATGAAGTGGAAGTGGGAAGATGTGAATTTTATGAGA
Downstream sequence
AAAGCAATTTTTGGAATTGGAGCAGAGATAGAAGTTTTACAGATTGAGTAAAATATTGGAAAGACTTGTTttacaaaatagtcattgtgctataaaaata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate