Basic Information
VIS ID
TVIS44025376
Fusion event
HTLV-1-CFAP299 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
81510980/80589826 (Hg38)
End
81510980/80589826 (Hg38)
Orient
-
Location type
Intronic
Target gene
CFAP299
Nearest miRNA
hsa-mir-12113/Upstream/4014200; hsa-mir-1243/Downstream/2163511;
Nearest TSS
ENST00000502981/Upstream/254045; ENST00000621014/Downstream/280223;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/203028, chr4-CpG: 88/Downstream/440961
Upstream sequence
acaagagaattaaaatgagctgtatttcatacccacgaggtcgacaaaaatttaaagagaccagttacttcaaatgcaagtgagatgtgaagtaagaaac
Downstream sequence
catgtttggtgatggcagtagagtacattgttaggcaactttagagagcagtttgacaatatctagtaaagagaaagatgtgtataatctttatactagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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