VISDB Viral Integration Site DataBase

VIS ID

TVIS44025389

Fusion event

HTLV-1-PPM1K integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr4

Cytoband

q22.1

Reference genome

Start

End

89199598/88278446 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-8061 ; hsa-mir-4668-5p ; hsa-mir-4760-5p ; hsa-mir-376a-5p ; hsa-mir-4695-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-2681-5p ; hsa-mir-668-3p ; hsa-mir-5571-5p ; hsa-mir-22-3p ; hsa-mir-204-3p ; hsa-mir-211-3p ; hsa-mir-1227-3p ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-1281 ; hsa-mir-1282 ; hsa-mir-1292-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-1915-3p ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3667-3p ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4279 ; hsa-mir-4327 ; hsa-mir-4459 ; hsa-mir-4485-5p ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4701-3p ; hsa-mir-4726-3p ; hsa-mir-4793-3p ; hsa-mir-498 ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-5707 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-661 ; hsa-mir-665 ; hsa-mir-670-3p ; hsa-mir-6720-5p ; hsa-mir-6734-3p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6764-5p ; hsa-mir-6771-3p ; hsa-mir-6776-5p ; hsa-mir-6778-3p ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-129-5p ; hsa-mir-3167 ; hsa-mir-7850-5p ; hsa-mir-876-5p

Nearest miRNA

hsa-mir-12113/Upstream/977863; hsa-mir-1243/Downstream/10718941;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/119144, chr4-CpG: 108/Downstream/5354

Upstream sequence

GGGTGGCAGCAGAATTGGCTCATCAATGCGGTTATCCCAGATCCCAAAATTGTCCCAGGTAGCTGGACTCCCACTACCATCTGGGTCAAACCGAGAACAC

Downstream sequence

CTAGGCTCTGAAGTGGAGCTGTGGCACGTGGGTGTCACCCGCCTGTCGTCCTGCAGCAGGCGGGAGCTTAGCAGCACTCTCCTTCTCACCTGGTTCCCAC