Basic Information
VIS ID
TVIS44025404
Fusion event
HTLV-1-LOC105379117 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
108861121/109525420 (Hg38)
End
108861121/109525420 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LOC105379117
Nearest miRNA
hsa-mir-10397/Upstream/8708855; hsa-mir-103a-1/Downstream/988409;
Nearest TSS
ENST00000502646/Upstream/27543; ENST00000502261/Downstream/162909;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/115370, chr5-CpG: 171/Downstream/163844
Nearby gene
PJA2(-115446) ;
Upstream sequence
GTGACTTGACAGCAGAAACAACTTAATCAAAATGCAATTACTTTCCCATTTCCATATTCTTTGTTGAATTGATCAAATATTCATTTCATGAAACCCAAAT
Downstream sequence
AATTGTTGATTTTTTTCCTCAACACAATTATGGAATTCTAAGTGTCAATATAGTTATTCAGGCTGAATAACAAAACAGTCTCTTGTGATAACTTGCAAAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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