Basic Information
VIS ID
TVIS44025405
Fusion event
HTLV-1-CTNND2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
10979228/10979116 (Hg38)
End
10979228/10979116 (Hg38)
Orient
-
Location type
Intronic
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/500971; hsa-mir-103a-1/Downstream/3846813;
Nearest TSS
ENST00000502646/Upstream/202054; ENST00000505877/Downstream/38944;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/217303, chr5-CpG: 115/Downstream/405453
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
CAATGCCAACTCCCGGGGAAGGAAGGCTGGTGCAGAGGGAGCTGGTTCCAATGAGGAGCTTCTCTCTACCTGAGGGGACTCAAGATGAATCTCACACTCT
Downstream sequence
TGGCGGCAAAATCATGGTCCTATTACAACCTGACAAGAATCTGTAATAATTGGCAATAATCTGCTTACTGTACATCCAGAATTTCATAATATTTGCTGCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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