Basic Information
VIS ID
TVIS44025435
Fusion event
HTLV-1-C5orf66 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
134387297/135051607 (Hg38)
End
134387297/135051607 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
C5orf66
Nearest miRNA
hsa-mir-10397/Upstream/825755; hsa-mir-103a-1/Downstream/751378;
Nearest TSS
ENST00000502646/Upstream/11560; ENST00000507058/Downstream/68919;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/927, chr5-CpG: 45/Downstream/139630
Upstream sequence
CCAATGTAATGCTCCTATTGGCTGAGTTCCTTCTGTGTGTCCCatcgtgcaaggttaggtactgttgcatgggccattttacagatgagaaaacctaagg
Downstream sequence
cccagagggagttactgcctcaggcagcaaggggaagaattgggattcagacttaggttggctgatgcaagagcttcctgccctGGTGCTTTCAGCCTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate